Sedimentary ancient DNA metabarcoding delineates the contrastingly temporal change of lake cyanobacterial communities

Authors

Xiaofeng Cao, Xiaoyan Xu, Rui Bian, Yajun Wang, Hongwei Yu, Yan Xu, Gaoqi Duan, Lijiao Bi, Pengfei Chen, Shaopeng Gao, Jie Wang, Jianfeng Peng, Jiuhui Qu

Harmful cyanobacterial blooms consisting of toxic taxa can produce a wide variety of toxins to threaten water quality, ecosystem functions and services. Of greater concern was the changing patterns of cyanobacterial assemblage were not well understood due to the lack of long-term monitoring data over the temporal scale. Biodiversity change in cyanobacterial community and paleoenvironmental variables over the past 170 years in Lake Chenghai were investigated based on sedimentary ancient DNA metabarcoding and traditional paleolimnological analysis. The results showed species richness and homogenization of cyanobacterial assemblage increased in the most recent decades, which were synchronized with the growth of artificial fertilization and decline in precipitation. Cyanobacterial co-occurrence network analysis revealed more complex interactions and weak community stability after the change point of ∼1987, while the rare cyanobacterial genera such as Anabaena, Planktothrix, Oscillatoria and Microcystis were identified to be keystone taxa affecting cyanobacterial assemblage. Furthermore, an increase of toxin-producing cyanobacterial taxa was significantly and positively associated with TN and TP, as well as TN/IP and TN/TP, which was verified by quantitative real-time PCR of mcyA and rpoC1 genes. Threshold in total nitrogen (TN) concentration should be targeted no more than 0.60 mg/L to alleviate nuisance cyanobacterial blooms in Lake Chenghai. These findings reinforce the comprehensive understanding for the long-term dynamics of cyanobacterial assemblage responding to environmental change, which could contribute to proactively regulate environmental conditions for avoiding undesirable ecological consequences.

Composition characterization and biotransformation of dissolved, particulate and algae organic phosphorus in eutrophic lakes

Authors

Weiying Feng, Fang Yang, Chen Zhang, Jing Liu, Fanhao Song, Haiyan Chen, Yuanrong Zhu, Shasha Liu, John P. Giesy

Characteristics and transformation of organic phosphorus in water are vital to biogeochemical cycling of phosphorus and support of blooms of phytoplankton and cyanobacteria. Using solution ³¹P nuclear magnetic resonance (NMR), combined with field surveys and lab analyses, composition and structural characteristics of dissolved phosphorus (DP), particulate phosphorus (PP) and organic P in algae were studied in two eutrophic lakes in China, Tai Lake and Chao Lake. Factors influencing migration and transformation of these constituents in lake ecosystems were also investigated. A method was developed to extract, flocculate and concentrate DP and PP from lake water samples. Results showed that orthophosphate (Ortho-P) constituted 32.4%–81.3% of DP and 43.7%–54.9% of PP, respectively; while monoester phosphorus (Mono-P) was 13.2%–54.0% of DP and 32.9%–43.7% of PP, respectively. Phosphorus in algae was mostly organic P, especially Mono-P, which was ≥50% of TP. Environmental factors and water quality parameters such as temperature (T), electrical conductivity (EC), pH, secchi depth (SD), dissolved oxygen (DO), chemical oxygen demand (COD_cr), chlorophyll-a (Chl-a), affected the absolute and relative concentrations of various P components in the two lakes. Increased temperature promoted bioavailable P (Ortho-P and Mono-P) release to the lake waters. The results can provide an important theoretical basis for the mutual conversion process of organic P components between various media in the lake water environment.

Carbon and nutrients transfer from primary producers to lake sediments – a stoichiometric approach

Authors

Lech Kufel, Małgorzata Strzałek, Elżbieta Biardzka, Marcin Becher

We aimed to demonstrate different input of organic and inorganic carbon, nitrogen and phosphorus from three main groups of primary producers (phytoplankton, charophytes and vascular submerged macrophytes) to respective lake sediments. Studies were carried out in one eutrophic and two mesotrophic lakes. Samples of sediments were taken from profundal and from littoral zones, the latter divided into such overgrown by charophytes and others covered by vascular submerged macrophytes. We applied a stoichiometric approach to illustrate variable functional carbon to nutrients relationships. Among profundal sediments, the lowest organic to inorganic carbon ratio was found in sediments from the eutrophic lake due to precipitation of calcium carbonate during algal blooms. Extremely low inorganic carbon input to profundal sediment of one of the mesotrophic lakes may be explained by low phytoplankton production but also by dissolution of once deposited calcium carbonates. Charophyte-dominated littoral sediments contained significantly more inorganic carbon than other littoral and profundal sediments. Comparison of stoichiometric ratios between plant standing crop and underlying littoral sediments showed significant enrichment of sediments in nitrogen manifested by reduction of organic carbon to total nitrogen ratio during plant decomposition taking place both in charophyte and in vascular plant stands. We also attempted to divide phosphorus pool in sediments into organic P and calcium-bound P present in charophyte stands and in profundal sediments of eutrophic lake. In the former, calcium-bound P was estimated at 17–19% of the total P pool while in profundal sediments it amounted 42% of the total P. This difference suggests that calcium carbonate settling during algal blooms in a eutrophic lake may be more effective in P trapping than calcite encrustations covering charophyte plants in littoral sites. In conclusions, we underline the need of considering often neglected inorganic fractions of carbon and phosphorus to get better insight into carbon and nutrient burial in lake sediments.

The influences of historic lake trophy and mixing regime changes on long-term phosphorus fraction retention in sediments of deep eutrophic lakes: a case study from Lake Burgäschi, Switzerland

Authors

Luyao Tu, Paul Zander, Sönke Szidat, Ronald Lloren, and Martin Grosjean

Hypolimnetic anoxia in eutrophic lakes can delay lake recovery to lower trophic states via the release of sediment phosphorus (P) to surface waters on short timescales in shallow lakes. However, the long-term effects of hypolimnetic redox conditions and trophic state on sedimentary P fraction retention in deep lakes are not clear yet. Hypolimnetic withdrawal of P-rich water is predicted to diminish sedimentary P and seasonal P recycling from the lake hypolimnion. Nevertheless, there is a lack of evidence from well-dated sediment cores, in particular from deep lakes, about the long-term impact of hypolimnetic withdrawal on sedimentary P retention. In this study, long-term sedimentary P fraction data since the early 1900s from Lake Burgäschi provide information on benthic P retention under the influence of increasing lake primary productivity (sedimentary green-pigment proxy), variable hypolimnion oxygenation regimes (Fe∕Mn ratio proxy), and hypolimnetic withdrawal since 1977. Results show that before hypolimnetic withdrawal (during the early 1900s to 1977), the redox-sensitive Fe∕Mn-P fraction comprised ∼50 % of total P (TP) in the sediment profile. Meanwhile, long-term retention of total P and labile P fractions in sediments was predominantly affected by past hypolimnetic redox conditions, and P retention increased in sedimentary Fe- and Mn-enriched layers when the sediment-overlaying water was seasonally oxic. However, from 1977 to 2017, due to eutrophication-induced persistent anoxic conditions in the hypolimnion and to hypolimnetic water withdrawal increasing the P export out of the lake, net burial rates of total and labile P fractions decreased considerably in surface sediments. By contrast, refractory Ca–P fraction retention was primarily related to lake primary production. Due to lake restoration since 1977, the Ca–P fraction became the primary P fraction in sediments (representing ∼39 % of total P), indicating a lower P bioavailability of surface sediments. Our study implies that in seasonally stratified eutrophic deep lakes (like Lake Burgäschi), hypolimnetic withdrawal can effectively reduce P retention in sediments and potential for sediment P release (internal P loads). However, after more than 40 years of hypolimnetic syphoning, the lake trophic state has not improved nor has lake productivity decreased. Furthermore, this restoration has not enhanced water column mixing and oxygenation in hypolimnetic waters. The findings of this study are relevant regarding the management of deep eutrophic lakes with mixing regimes typical for temperate zones.

Interaction of bacterial communities and indicators of water quality in shoreline sand, sediment, and water of Lake Michigan

Authors

Meredith B. Nevers, Muruleedhara N. Byappanahalli, Cindy H. Nakatsu, Julie L. Kinzelman, Mantha S. Phanikumar, Dawn A. Shively, Ashley M. Spoljaric

Shoreline sand harbors high concentrations of fecal indicator bacteria (FIB) that may be resuspended into the water column through washing and resuspension. Studies have explored coastal processes that influence this sand-water flux for FIB, but little is known about how microbial markers of contamination or the bacterial community interact in the sand-water interface. In this study, we take a three-tiered approach to explore the relationship between bacteria in sand, sediment, and overlying water at three shoreline sites and two associated rivers along an extended freshwater shoreline. Samples were collected over two years and analyzed for FIB, two microbial source tracking (MST) markers (Catellicoccus marimammalium, Gull2; Bacteroides HF183), and targeted metagenomic 16S rRNA gene analysis. FIB was much higher in sand than in water at all three sites. Gull2 marker was abundant in shoreline sand and water while HF183 marker was mostly present in rivers. Overall bacterial communities were dissimilar between sand/sediment and water, indicating little interaction. Sediment composition was generally unfavorable to bacterial resuspension. Results show that FIB and MST markers were effective estimates of short-term conditions at these locations, and bacterial communities in sand and sediment reflected longer-term conditions. Findings are useful for locating contamination sources and targeting restoration by evaluating scope of shoreline degradation.

Nutrients and Heavy Metals in Legacy Sediments: Concentrations, Comparisons with Upland Soils, and Implications for Water Quality

Authors

Alyssa Lutgen, Grant Jiang, Nathan Sienkiewicz, Katie Mattern, JinJun Kan, Shreeram Inamdar

Concentrations of nutrients and heavy metals in streambank legacy sediments are needed to estimate watershed exports and to evaluate against upland inputs. Concentrations of nutrients and heavy metals were determined for legacy sediments in 15 streambanks across northeastern Maryland, southeastern Pennsylvania, and northern Delaware. Samples were collected from multiple bank depths from forested, agricultural, urban, and suburban sites. Analyses were performed for fine (<63 μm) and coarse sediment fractions. Nutrient and heavy metal concentrations were significantly higher in fine than coarse legacy sediments and water extractable nutrient concentrations were significantly greater for fine sediments. Nutrient and heavy metal concentrations were highest in streambank legacy sediments associated with urban land use, but few differences were found with bank depth. Total N (40–3,970 mg/kg) and P (25–1,293 mg/kg) and bioavailable P (0.25–48.8 mg/kg) concentrations for legacy sediments were lower than those for reported for upland soils. This suggests that legacy sediments could serve as sink or source of N and P depending on the redox conditions and stream water nutrient concentrations. However, despite low concentrations, caution should be exercised since streambank erosion and legacy sediment mass loadings could be high, these sediments are in immediate proximity of aquatic ecosystems, and biogeochemical transformations could result in release of the nutrients.

Microbial community composition in alpine lake sediments from the Hengduan Mountains

Authors

Binqiang Liao, Xiaoxin Yan, Jiang Zhang, Ming Chen, Yanling Li, Jiafeng Huang, Ming Lei, Hailun He and Jun Wang

Microbial communities in sediments play an important role in alpine lake ecosystems. However, the microbial diversity and community composition of alpine lake sediments from the Hengduan Mountains remain largely unknown. Therefore, based on the Illumina MiSeq platform, high‐throughput sequencing analysis of the 16S rRNA gene was performed on 15 alpine lake sediments collected at different locations in the Hengduan Mountains. The abundance‐based coverage estimate (ACE), Chao1, and Shannon indices indicated that the microbial abundance and diversity of these sediments were high. There are some differences in the composition of microbial communities among sediments. However, in general, Proteobacteria accounted for the largest proportion of all sediments (22.3%–67.6%) and was the dominant phylum. Followed by Bacteroidetes, Acidobacteria, Chloroflexi, and Planctomycetes. In addition, the operational taxonomic unit (OTU) interactions network had modular structures and suggested more cooperation than competition in the microbial community. Besides, we also found that temperature has a significant contribution to the sample–environment relationship. This study revealed the diversity and composition of microbial communities in alpine lake sediments from the Hengduan Mountains, and describe the correlation between microbial community structure and different environmental variables.

Environmental resistome risks of wastewaters and aquatic environments deciphered by shotgun metagenomic assembly

Authors

Mutshiene Deogratias Ekwanzala, John Barr Dewar, Maggy Ndombo Benteke Momba

In this paper, we deciphered the core resistome disseminating from hospital wastewater to the aquatic environment by characterising the resistome, plasmidome, mobilome and virulome using metagenomic analysis. This study also elucidated different environmental resistome risks using shotgun-metagenomic assembly. The results showed that clinically relevant taxa were found in assessed matrices (Salmonella spp., Acinetobacter spp, Escherichia–Shigella spp., Pseudomonas spp., Staphylococcus spp. and Vibrio spp.). For the plasmidome, we found 249 core plasmidome sequences that were shared among all assessed matrices. The core mobilome of 2424 mobile genetic elements shared among all assessed matrices was found. Regarding the virulome, we found 148 core virulence factors shared among all assessed samples, and the core virulome content was consistently shared across the most abundant bacterial genera. Although influent of wastewater showed considerable higher relative bacterial abundance (P = 0.008), hospital wastewater showed significant higher environmental resistome risk scores against all other assessed matrices, with an average of 46.34% (P = 0.001). These results suggest hospital wastewater, effluent and sewage sludge should be subjected to stringent mitigating measures to minimise such dissemination.

An experimental study about the effects of phosphorus loading in river sediment on the transport of lead and cadmium at sediment-water interface

Authors

Tingting Shen, Yuanyuan Tang, Yong Jie Li, Yunsong Liu, Hongwei Hu

Phosphorus (P) in the river sediment plays an important role in the fate and transport of heavy metals at sediment-water interface of the aquatic eutrophication environment. To explicate the effect of P loading, the sediments with different P contents were employed in this study to experimentally investigate the adsorption/desorption of Pb²⁺ and Cd²⁺ and the releasing behavior of P during the adsorption/desorption processes. Results illustrated a strong affinity between Pb²⁺ ions and the P-containing sediments in both single Pb and binary Pb + Cd systems. In single-metal systems, the Pb²⁺ adsorption capacities of all types of sediments (15.04–19.44 mg g⁻¹) were higher than those for Cd²⁺ (4.68–5.56 mg g⁻¹). While in binary-metal systems, the Pb²⁺ adsorption was slightly influenced by the coexisting Cd²⁺, but the Cd²⁺ adsorption capacities were decreased by over 5 times. Moreover, the adsorption amount and retention ability of Pb²⁺ on sediment were enhanced by increasing content of P in the sediment. Meanwhile, the releasing of P was also closely depended and significantly inhibited by the Pb²⁺ attached on the sediment. The P release amounts during the desorption processes of Pb- and Pb + Cd-loaded sediments were over 50 times lower than those from the raw sediments (sediments without heavy metals adsorbed), but the values decreased by a factor of two for the single Cd-loaded sediments. Furthermore, the results of X-ray photoelectron spectroscopy indicated the crucial role of P loading in Pb transport in the sediment and overlaying water. The findings in this study showed important implications for the transport of heavy metals and P at the sediment-water interface and offered new insights for further explicating the mechanisms of secondary pollution caused by heavy metals and P in aquatic eutrophication environment.

Different substrates within a lake harbour connected but specialised microbial communities

Authors

Ester M. Eckert, Stefano Amalfitano, Andrea Di Cesare, Caterina Manzari, Gianluca Corno & Diego Fontaneto

Natural water bodies contain physically interconnected habitats suitable for microbes, such as different water layers and substrates for biofilms. Yet, little is known on the extent to which microbial communities are shared between such habitats and whether differences and similarities are consistent between sites. Here we explicitly tested hypotheses on similarities between aquatic bacterial communities found floating in water, in association with daphnids and with copepods, within bottom sediments, and on littoral stones of a lake. Through high-throughput 16S rDNA amplicon sequencing, distinguishable patterns were retrieved between habitats. In particular, community composition was more similar between the two zooplankton taxa, between the two water depths, and was rather different in sediments, where a large fraction of the total diversity was present. Most bacterial taxa were restricted to one or few habitats, whereas only few were found as generalists on different habitats. Our results indicate a limited role of source–sink dynamics between habitats for aquatic bacteria. Similarly to patterns of diversity in larger organisms, community composition was different between habitats, potentially because of specific mechanisms creating and maintaining habitat filtering.